I feel like maybe you didn't understand what I was saying so I'll try to restate it more precisely. The problem is that I have a pin connected to an isolated portion of the board which means the pin is floating in reference to the MCU ground. Can a floating voltage on one pin affect the ADC on a different pin?
I know that you shouldn't connect isolated power supplies to the same MCU but a trace was left that should have been removed.
***From what I understand, the input and output of an isolated power supply are not at the same potential.
--- That is correct, that is what I think it might be killing my ADC and/or temp sensor but I don't know what happens inside the chip and that's why I asked the question
***Please check if there are other pins connected to different power source
--- There are no other pins with this problem
***Should not they connect to the same power(before isolated isolated power)?
--- Yes they should, that's why I think my problem is happening
***If disconnect these pins, will the ADC works correct?
--- The ADC works correctly on 97/100 boards so far with the pins connected. On the failed boards, disconnecting the pin has no effect. I assume because the part has failed internally.