Hi Richard,
The thing is it wasn't designed for such a use case.
If you take a look at Section 23.2.5 VDDPLL, VSSPLL — Regulator Output3 (PLL) Pins (S12XEP RM, rev.1,25),
it states:
"Signals VDDPLL/VSSPLL are the secondary outputs of VREG_3V3 that provide the power supply for the PLL and oscillator. These signals are connected to device pins to allow external decoupling capacitors (100 nF...220 nF, X7R ceramic)."
So that's the purpose of the pins, to allow connecting the decoupling capacitors.
Regards,
Daniel