Hello,
the correct version of the CPU reference manual depends on the actual MCU family used:
* most S12 devices generally refer to the S12CPUV2 Reference Manual (S12CPUV2.pdf, latest Rev as of today: 4.0)
* some S12X (e.g. S12XD) refer to the S12XCPUV1 Reference Manual (S12XCPUV1.pdf, latest Rev as of today: 1.01)
* most S12X (e.g. S12XS, S12XF, S12XE) and recent S12 devices (e.g. S12P) refer to the CPU12/CPU12X Reference Manual (S12XCPUV2.pdf, latest Rev as of today:1.03)
This last document mentioned above actually describes the all existing ISA versions for CPU12 and CPU12X.
HTH,
MJW