It is required to check:
1) power sequencing (QorIQ T1040, T1020 Data Sheet, 3.2 Power sequencing)
2) TRST_B is pulsed asserted during POR (T1040 Family Design Checklist, Figure 25. JTAG interface connection)
3) PLL voltage supply filters are implemented as described in the T1040 Family Design Checklist, Table 4. Power design system-level checklist
4) termination of all signals having explicit notes in the QorIQ T1040, T1020 Data Sheet, Table 1. Pinout list by bus and use a digital scope to check POR levels of all there signals.