To whom may it concern.
Hello I'm HS.
I've been working on designing the board referenced LS1046ARDB and FRWYLS1046.
The board does not include CPLD nor MCU, quite similar to FRWY.
Q1. System clock.
There are two different system clocks - Differential and single ended one.
Datasheet denotes that you can choose either diff or single ended one.
I'll opt for differential clocks.
But i saw single and diff. clocks are still connected to the respective pins in both LS1046ARDB and FRWYLS1046.
Do we need to input these clocks to diff. and single clock pins even though you don't use one of them?
Or can we omit one of them? (Screenshot below is from LS1046ARDB.)

Q2. SerDes, DDR clocks.
Do clocks which go into SerDes and DDR have to synchronize with system clock?
I'm wondering if they have to synchronize with another clock.
If they don't need to synchronize with any clock, would it be possible to use XTAL/VCTCXO as a source of DDR or SerDes Clock?
Q3. 1588
One of my main goals is to obtain clear 1588 pulse from LS1046A.
What should we do to boost the quality of 1588 pulse with respect to jitter?
I assume that if Pin AC1(TSEC_1588_CLK_IN) is applied with 125MHz, then Pin AE1(TSEC_1588_PULSE_OUT1) and AF3(TSEC_1588_PULSE_OUT2) source the 1PPS.
Am i correct?
Does this 125MHz synchronize with some other clocks to improve the integrity?
I would really appreciate if you elaborate how to get good quality of 1588 1PPS and how LS1046A process it.
Q4. Does AQR107 in LS1046ARDB have something to do with 1588 1PPS?
Thank you.