Hello Simon Haines:
Please let us know the version of Processor Expert or the IDE version that you are using (Codewarrior or Kinetis Design Studio).
Are you sure you selected K20FX512 from the New Project Wizard?
This device does not have any RTC_CLKIN pin, only the XTAL32/EXTAL32 pins for the crystal.
Using KDS v3.1.0 I do not have any issues to set your required configuration, see below:

Regards!
Jorge Gonzalez