Hello
I assume you are looking for building a stand alone application for your MPC55xx project. Am I right?
If this is the case you need to create a ROM image for your application.
I checked your .lcf file and it seems it is set up for ROM image creation. All you need is to add the options -romaddr and -rambuffer to your linker command line.
The address specified in romaddr and rambuffer must be the start address of the flash memory area.
In your case "-romaddr 0x00002000 -rambuffer 0x00002000"
CrasyCat