Hi @gang_wang,
The duty-cycle is probably not updated because of the C(n)V and C(n+1)V register synchronization (S32K1xx, RM rev13, Section 47.5.13.6)
There are other FTM features that can be used: Software Output Control Mode (Section 47.5.15), Output mask (Section 47.5.17).
But it also requires synchronization: Section 47.5.13.9 SWOCTRL register synchronization, Section 47.5.13.7 OUTMASK register synchronization.
Regarding MBDT, please post your questions in the MBDT community: https://community.nxp.com/t5/NXP-Model-Based-Design-Tools/bd-p/mbdt
Regards,
Daniel