Hello,
There is one thing I missed yesterday to check. Apart from the pins and DIO component, you also need to configure the Port component to use the specified pin. Since you are using a older version of the toolbox, the port pin is not automatically updated based on the Pins configuration (and that is why it works in S32DS).
To sum up:
1. Open the configuration project and navigate to the Port component.
2. In the Dio Port container, add a new Port Pin with the MSCR of the pin you want (in this case, for PTB28, MSCR is 60).
SorinIBancila_0-1764928331753.png
Let me know if this solves your problem.
Best regards,
Sorin Ioanid Bancila