Hello @simon98,
Thank you for your interest in Model-Based Design Toolbox for S32K3!
I analyzed the attached project and I can say that most of the ADC configuration options are performed correctly, the only exception being the Last Mile Regulator which is still enabled (please re-visit Step 2.4 from the linked article). However, when looking in the schematics of the S32K358-Q289 EVB, it can be observed than neither of the RGB LEDs can be routed as eMIOS channels:

Unfortunately, this means that the dimming effect desired cannot be achieved and the configurations performed for eMIOS in the attached project have no effect.
If you want to further explore the ADC and PWM capabilities of the board, I suggest using different pins that fully support them.
I hope this explanation clarifies the current issues you have, and, if further issues occur please don't hesitate to contact us again.
Best regards,
Florin!