Hello @zcampbell ,
I had a look at your model and the reason for which the ADC interrupt is not triggered, is because no conversion actually is triggered. And here is why:

You have selected the CTU to trigger a dual conversion, which means that you are expecting to perform two ADC conversions simultaneously. But both of them on the ADC1 which is impossible. Each ADC instance has only one Hardware ADC converter. There are different channels that can be used as input for the converter but not at the same time.
However, the CTU is capable to trigger such dual conversion but on different instances. So what I've done is I've added the ADC0 instance, Where Port A is the ADC0 Channel 6 and the Port B is the ADC1 Channel 1.

This diagram here explains how the ADC instances are connected to the CTU instances.

Hope this helps,
Marius