Hi Fernando,
in _bsp_gpio_io_init() function before enable clock to all ports you add:
/****** Set PTD6 as input ********/
PORTD_PCR6=(0|PORT_PCR_MUX(1));
//Change PTD6 to input
GPIOD_PDDR&=~ GPIO_PDDR_PDD(0x40);
/****** Set PTC1 as input ********/
PORTC_PCR1=(0|PORT_PCR_MUX(1));
//Change PTC1 to input
GPIOC_PDDR&=~ GPIO_PDDR_PDD(0x1);
Regards