LPC824/MCUXpresso:
After configuring an input pin to trigger an interrupt using the PINT config tool, GPIO outputs don't work properly. I have found that if the order of initialization in main() is modified such that BOARD_InitBootPins() is called after BOARD_InitBootPeripherals(), the problem is resolved.
Apparently, PINT configuration is altering the GPIO pins configuration setup in BOARD_InitBootPins() such that outputs no longer function properly.