Hi Amey Bhopi,
You can use the FlexTimer interrupts to call an ISR function where you toggle the PTC14 pin to feed the watchdog. Please find attached an example project and document that describe the FlexTimer and a few of its uses, the example was created for the K60 MCUs but you can use it as reference for your application.
You could also use Processor Expert to do this, please take a look to the following post created by our colleague Erich Styger, it explains how to blink a led using a timer:
http://mcuoneclipse.com/2013/03/29/version-control-with-processor-expert-projects/
Hope it helps!
Best Regards,
Carlos Mendoza
Technical Support Engineer
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