Hi, Gcary,
whether you need to connect the /CSx signal to FPGA is dependent on the address connection, I think it is necessary to connect the /CS pin to FPGA.
After you connect the /CS pin, you are not required to connect all 32 address pins to FPGA, for example, assume that the FPGA includes 256 Bytes, in the case, you just connect the FB_A0~FB_A7 address and one /CSx, it is okay, the High address from A8~A31 are not required to be connected. If you do not connect /CSx, you have to use High address to decode the chip select by FPGA itself, obviously, you need more high address pins besides the FB_A0~A7 pins. There is a FB_CSARn register of FlexBUS, which can specify the high address.
Regarding the FB_ALE, in order to reduce the FlexBUS pins number, some data and address pins are multiplexed, when the FB-ALE is high, the pins are address pins, user have to use a latch to lock the address for example 74HC373, you can make the FPGA as a latch. when the FB_ALE is low, the pins are data bus.
Hope it can help you.