Hello,
FreeMASTER supports different communication interfaces - you do not describe which of them you use, so I assume you use the serial communication (SCI/UART) which is a default option.
In order to use the LIN protocol, you will need to integrate a LIN software stack into your application. A LIN stack is available from NXP. I will ask my colleagues to help you find it.
BTW: Note that FreeMASTER can also communicate over LIN, but there are several limitations and pre-conditions. The FreeMASTER requires the LIN stack to support "diagnostic class II & III" which is not very common. In short, when you start using LIN, you will most probably lose the FreeMASTER connectivity (or you can run it over another SCI port).
Regards,
Michal