Well, first, I might be a guru, but I don't know the CF compiler that well.
So I can only read the manual as you did. The snippet you copied is out of the msl library pdf, a document describing MSL in general and not specifically for the CF compiler. So I would take those functions as hint what intrinsics are used for, and not even those as granted for the CF compiler. Maybe he supports them, maybe not, I don't know.
However the Targeting_ColdFire.pdf manual also contains something about intrinsics, see below. So for CF looks like at least strcpy (I hope strcopy is a typo in the manual) and strlen are real intrinsics, for all others: I don't know.
Anyway, I also noted that E68K_Support\msl\MSL_C\MSL_E68k\Include contains a few inline assembly functions, technically those are not intrinsics though, but they don't have the call overhead either.
I wonder why you are asking for a list, in the end its up to the compiler to replace the intrinsics he wants, and to generate normal function calls for anything else.
Daniel
inline_intrinsics
Controls support for inline intrinsic optimizations strcopy and strlen.
#pragma inline_intrinsics [ on | off | reset ]
Remarks
In the strcopy optimization, the system copies the string via a set of moveimmediate
commands to the source address. The system applies this optimization
if the source is a string constant of fewer than 64 characters, and optimizing is set
for speed.
In the strlen optimization, a move immediate of the length of the string to the
result replaces the function call. The system applies this optimization if the source
is a string constant.
The default value is ON.