Hello Levent Karakaya,
First you need to install Linux GNU Build Tools Service Packs, please install it from Help->Install New Software->Work with:(drop list)->FSL PA Build Tools - http://freescale.com/lgfiles/updates/Eclipse/PA10_5_1/com.freescale.pa.buildtools_win->; PA GCC LinuxGNU Build Tools Service Packs.
After installation, please create a Linux app project from File->New->Create a CodeWarrior Linux Project, all QorIQ related platforms use the same toolchain for Linux App project.
After build the Linux APP, you could copy the binary to the target board to execute it directly.
Please refer to SDK document Submit Form for how to deploy images on the target board.
Have a great day,
Yiping
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