I received a reply from support@axman.com, here it is:
>Greg
>
> Thank you for bringing this documentation error to my attention. I apologize for any
> inconvenience this error may have caused. The board design changed between Rev A and
> Rev B. Unfortunately I didn't get the supporting documentation updated before
> publication.
>
> For signal connections on the board, the schematic is correct. The silkscreen on the
> MCU_PORT connector, the silkscreen pdf, and the User Guide (UG) all incorrectly show
> signal assignments for the IRQ signals you mentioned. During my review of the UG, I
> noticed the PB switch assignment was also incorrect. I went through the UG completely
> and there should not be any other errors. If you find any other inconsistencies,
> please let me know.
>
> I have attached the updated UG and an Errata sheet for your documentation. If you have
> any questions please do not hesitate to contact me.
I have attached the updated documents for Rev. B of the evaluation board to this thread for all to use.
Greg