Hi Mike,
If the on-board oscillator is 14MHz, then I suspect it is from a small batch of EVBs that went out with initial samples that didn't have the oscillator trimmed correctly. I recommend returning the board to the distributor (or Freescale, if you bought it direct) and get a new one. It is not possible to write to the trim bits.
On your recommendations for the clock module block diagram, I will forward your suggestions to the documentation team. Thanks for the feedback.
Mac