Hi,
LDMOD bit specify when the buffered registers are loaded with new value.
For LDMOD=1 registers are loaded and take effect immediately after LDOK is set,
for LDMOD=0 reagisters are loaded and take effect at the next PWM reload if LDOK is set.
So the PWM will be generated depending on time when LDOK is set. With LDMOD=1 you can simply miss the edge.
BR. Petr