Hello Taylor,
By connecting to a simple BDM or MON08 header on the target, the Cyclone PRO can program, test, or debug internal memory on a Freescale processor or external flash connected to the processor's address/data bus.
I recommend to use the following configuration in order to program your device:
I hope this information will be useful for you. In case you still have questions, please let me know. I will be glad to help.
Have a great day. :smileyhappy:
David