Sorry, cannot do the job for you, i don't know your schematic. GPIO from userspace, if gpios are free, does not need any patch, should work quite well.
1) check your spi<->pgio converter is detected and gpios are available from userspace, seems yes
2) access them by export, supposing your led is connected to gpio24, by
echo 24 > /sys/class/gpio/export
echo out > /sys/class/gpio24/direction
echo 1 > /sys/class/gpio24/value
echo 0 > /sys/class/gpio24/value