Hi Mary,
If you want to use the LPC1768 to control your FPGA via JTAG, you can select some IO pin, then simulate the JTAG control sequence to control FPGA, and write the according code. But I Think you can use the LPC JTAG pin to control the external JTAG device, the on chip JTAG interface is used for the chip debug mode, to chip, it is a slave, but actually, you want to use the LPC as the JTAG master. So you need to prepare the according code. You also need to learn the JTAG protocol.
Wish it helps you!
Have a great day,
Kerry
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