Hi,
Thank you so much for your interest in our products and for using our community.
I am testing the example frdmke16z_ftm_pwm_twochannel (SDK version 2.13.0) and probing the signal using an oscilloscope on LEDRGB_BLUE, it does output the PWM as expected

Maybe the reason you don't see the signal on the arduino pinout is that R9 is not populated by default.

Hope it helps you.
Have a nice day!