Hello,
If you look at the simplified schematic data for the KBI module, you will see that all the enabled KB inputs are ORed together before being fed to the interrupt generating circuitry. Assuming that the interrupts will be edge-only triggered, and the PTA inputs will respond to a negative edge, if any one of the enabled inputs goes low, it will generate an interrupt only if none of the other enabled inputs is already low.
Once an interrupt has occurred, if you need to sense whether any other input has been activated, you would need to poll the port status prior to exiting the ISR. If you were to temporarily disable any low state input from the KBI (from within the ISR), this would enable the other inputs to also generate an interrupt. Alternatively, you might flip the edge polarity so the next interrupt for that input would occur on the positive edge.
If the encoders you are using are also subject to switch bounce, you will need to disable each input for a suitable switch de-bounce period following a transition.
Regards,
Mac