We have recently got some new P&E Micro Multilink Universal debuggers. We used to use the P&E Micro HCS08 Multilink.
With the old units (and this still works), we could use the 'Flash Programmer' tool to place the bootloader in the device in preparation for Internal Test.
Although we go through the exact same steps, the blue P&E Micro Multilink Universal does not work. Although it does not give any errors.
I have contacted P&E Micro, they believe the problem is with the CodeWarrior Flash utility (mainly because the debugger works just fine).
CodeWarrior version 10.6 Build 140329
Flash Programmer for HSC09 - V 10.6.0.FSL_b8382