GPT_GetDefaultConfig doxygen states the enableFreeRun is set true when in fact it sets it to false. I noticed this in SDK 2.7 for imxrt 1060 processor. Also if NXP wishes to fix a bug please see my recent post on the topic of QTMR.
Thanks for catching this! I already reported this with the SDK team so they can fix it on future releases of the SDK.
Regarding the bug that you mentioned, could you please create a new community thread where you give a detailed explanation of this, so either I or one of my colleagues can check it.