Hi @luishs
AN12681 Application note needs the special approve, you can see the note when you download it:

Just input the distributor is not enough, it need the NXP salesperson or the FAE approve, so you need to contact with your distributor at first, they will help you contact with the NXP related person, I also don't have the approve authority.
To the secure JTAG, after it is secured, then you just can use the JTAG, not the SWD anymore.
About the BEE/ HAB, you also can use our SPT tool directly:
https://www.nxp.com/design/software/development-software/mcuxpresso-software-and-tools-/mcuxpresso-s...
It will help you secure the memory.
https://community.nxp.com/t5/i-MX-RT-Knowledge-Base/RT1015-APP-BEE-encryption-operation-method/ta-p/...
https://community.nxp.com/t5/i-MX-RT-Knowledge-Base/RT1050-HAB-Encrypted-Image-Generation-and-Analys...
But, please note, secure flash will need to burn the fuse, so you must very careful, and it can't back. I suggest you learn the related knowledge at first, then do the operation.
Best Regards,
kerry