Hello Eza,
Hope you are doing well.
The external signals of the ethernet module are provided in table 41-2 of the reference manual. Please refer to the description of how the signal can be used. The output of the timer module is through an event generator, it is not possible to redirect internal signal of the timer to a pin.
Although you are able to use the PPS signal, its purpose is to help measure the time synchronization. It is not used to feed a PLL and consequently provide the clock for other modules.
I believe what you are looking to use, will be a reference clock. You may use the reference clock use to synchronize with the PHY or the feedback clock that PHYs provide. These are at a much higher frequency.
Best Regards,
Sabina
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