I'm using Yocto 2.1 system with X11 on imx6 platform.
XCB/OpenGL apps have various glitches in fullscreen mode, GUI components have a bad refresh, I think caused by performance (e.g in normal mode an application use 25 % CPU, in fullscreen use 71% and some times is blocked).
I think that OpenGL accelerator is stopped in fullscreen mode but i can't be sure.
UPDATE:
es2gears_x11 FAIL in fullscreen
glxgears OK