Hi Swaraj,
The difference between the QSB and the start-R boards is the PMIC used. In the QSB the chip that supplies the i.MX is the DA9053, while in the start-R board, the PMIC is MC34708. What version of the start-R board are you using? There are very important differences between the latest version and old versions of the board, for example, the pin of the processor that senses the interrupt from the PMIC changed, if you have an old version, this feature won't work. There are two numbers in your board, sch-27104xx and 700-27104xx, could you please let me know the xx numbers? I'll try to reproduce your issue in the bench.
Thanks!
Best regards.
Jorge.