This behavior shows that this problem concerns to power supply of your Agilent U1252B and power supply of your i.MX6 board.
It looks like that there is a static voltage between your Agilent and your i.mx6 board.
If multimeter is connected before power on, there is no static voltage.
If multimeter is connected after power on, this static voltage produces reset of the i.mx6.
Connect the GND of your multimer and your i.mx6 board.
Have a great day,
Pavel Chubakov
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