Hello Ashok,
The patch that you mention it is for the Errata of the i.MX6 this made the pauses in the Ethernet to avoid the FIFO overruns, but I believe you are trying to implement iEE1588 Pauses which are completely different story.
This patch will cause compatibility problems with some switches. It should be possible to control their use manually or through autonegotiation (if the medium
supports that).
You should:
1. Implement the ethtool get_pauseparam and set_pauseparam operations.
If the medium supports autoneog, use mii_advertise_flowctrl() in
set_pauseparam to update pause frame advertising and then restart
autoneg.
2. Allow pause frame advertising to be changed through set_settings (I
think phylib covers this for you).
3. Program the MAC according to the the parameters set with
set_pauseparam or (if pause autoneg was enabled) the result of autoneg.