Hello joerutledge,
You may try adding them on the local.conf file just to test them although the imx-base.inc is where these variables are originally set.
I cannot find the original commit but the changes were as follow:
conf/machine/include/imx-base.inc
-SDCARD_ROOTFS ?= "${DEPLOY_DIR_IMAGE}/${IMAGE_NAME}.rootfs.ext3"
-IMAGE_FSTYPES ?= "ext3 sdcard.gz"
+SDCARD_ROOTFS ?= "${DEPLOY_DIR_IMAGE}/${IMAGE_NAME}.rootfs.ext4"
+IMAGE_FSTYPES ?= "ext4 sdcard.gz"
It's odd that it's changing the name but apparently not the file system but I haven't tested it.