Hi,
For RT1160-EVK, there is only one board.
About your questions, my comemnts as the following:
1. Please find the EVK SCH in the RT1160-EVK design resources and make sure you understand it. Before you want to quickly modify the clock frequency through the SW side, you need to analyze the hardware yourself to ensure that "lpspi2", "rtc", and "sdram" can be modified on this board. For specific methods, please refer to the FlexSPI example as below.
2. FlexSPI example: NXP-zsdk v4.1 repo is maintained and developed by NXP, but the dependent Zephyr which maintained by Zephyr community (The thirdpart Open Community). You can directly view the Zephy for the DTS configuration you are consulting. E.g, flexSPI1 (flexSPI1 is used for qspi flash as default on EVK board, PIN setting pinmux_flexspi1 depends on the hardware connection) shows it works on 104MHz. Same hardware connections and EVK board, but FlexSPI1 was configured for 133MhZ in NXP SDK v25.06, and it works fine too.

3. I assume that you can understand the EVK schematic and software DTS configuration, then you know that there is no LPSPI2 on EVK board. Only LPSPI support, and by default, this module is DNP (Diabled)

4. Therefore, it is needed to understand the datasheets of these third-party components and the EVK SW/HW to modify them to a reasonable value, not just assume to change it to 1GHz or 200MHz (Actually, the FlexSPI1 only support 166Mhz with some conditions if we are familiar with NOR Flash and its working mode).
5. About support scope, we support NXP official software and hardware. Due to uncertainties, support for some customized products is limited.