Perhaps the XTAL_32K pin (PTA19 on MKW01) is loaded or pulled high by LED1_ Onboard on TWR to which is it connected via the jumper on J6 pin 25-26.
pull that jumper (4th from the top in your photo) and retry it.
I am concerned that there would be several cm of path length from MKW01 pin thru J14 on MRB to TWR J5 to J6 etc... picking up noise. Removing the 0 ohm R10 from the MRB would disconnect that path length.
If PTA19 is programmed to drive that LED. After you convert the oscillator on the MKW01 to use both PTA18 and PTA19 and disconnect the connection the LED will no longer be available.
Likewise the EXTAL_32K signal has a longer trace to TWR-J1-17, removing R11 on MRB disconnects that path.
Bill Poole
Freescale Applications Engineering.