I think this is related to a few path problems with the various JCShell related plugins. It looks like you're trying to use the card reader to activate your JCOP tools plugin (given the "LicenseWizard" method? If that's correct, my guess is that the instantiation problem you're having is related to not being able to find JNISCCommWrapper_xx.dll and its ilk.
Try this:
1) Figure out where the plugin is stored on your machine - mine is at c:/Users/<myname>/.p2/pool/plugins/com.nxp.jcop.eclipse_6.9.0.12
2) The DLLs you need are in os/win under that directory.
3) Either create a .bat file that adds that os/win to the PATH environment variable before running eclipse, or add it to the global PATH var.
Also, make sure you have the Windows 2010 C++ redist installed. JNISCCommWrapper appears to need it.
See if that helps. Also, this should fix some issues with the JCOP tools internal JCShell window.