Hi @Ayaz,
I would recommend firstly trying an example from the RTDs package:

You can use the trigger mux in order to drive the eMIOS MCL signal out in a pin. There is a community post with a similar issue: Solved: S32K3 TRGMUX example - NXP Community
For the timing configuration, you can refer to the routine to set the trigger time inside the development kit application SW: S32K344 BLDC/PMSM Development Kit


The green signal eMIOS_CH0_CNT starts from 0 until a particular value and then resets to 0 (MCB_UP_COUNTER), the default period range can go from 0 to 65535, which with a 160MHz clock would be from 0 to 410uS.
Best regards,
Julián