@VaneB
Yes, I'm following the entry sequence mentioned. I tried by configuring GPIO wake up from stop2 mode, it works fine(MCU remains in sleep until GPIO state change). So, I feel there shouldn't be any mistake with the entry sequence.
But when I try with CAN wake up, this issue where MCU wakes just after entering stop2 mode occurs. Even I've verified that no resets occurred during sleep entry and exit.