Hi
Please read the 40.4.5 Debug in low power modes of S32K1xx MCU Family - Reference Manual.
When both requests are asserted, the mode controller handles attempts to enter STOP and VLPS by entering an emulated stop state.

7.3. Tips for making low-power measurements on the bench of AN5425 Power Management for S32K1xx also suggest that you should: Disconnect the debugger and power cycle the MCU

Please refer to the power_mode_switch_s32k144 example in S32K1 SDK.(for example: S32K1 SDK RTM4.0.3 in S32DS v3.4)

As you can see, it will disable SPLL\FIRC\SOSC at line 498 returnCode = POWER_DRV_DisableVlpClockSrc(); by SCG_SetEnableSPLL(false); and SCG_SetEnableFIRC(false);
Best Regards,
Robin
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