Hello @wael_b,
The problem is that the configurations showed in S32G_Bootconfigwords_EVB.xlsx are meant for the EVB/RDB boards, moreover, its meant to be configured in the RCON bits, which are reconfigurable. As you can see at the bottom of the excel sheet, for the don't care bits its better to check the reference manual:

For example, if you check the SD_BOOT_CFG, you will see a lot of "don't care" bits, but the "lack of effect" is for the SD configuration in EVB/RDB boards in particular, it is not that the bits themselves don't have any effect.
Regarding the not supported configuration mentioned in the AN13456, I will need to check internally for more details.
For reference I found the following in an internal document:
"
The bit XOSC BYPASS MODE of BOOT_CFG1 is used to select the external clock source mode for FXOSC module. The FXOSC module can choose one of the three clock source modes as its input. The three clock source modes are respectively Crystal (component) mode, (external) Differential (clock source input) mode and (external single-ended clock source) BYPASS mode. When customers utilizes the passive crystal (which works in Crystal Mode) or active differential clock oscillator (which works in Differential mode) as FXOSC input, they should set XOSC BYPASS MODE 0. In this case, if without other further settings, FXOSC will consider the input working in Crystal mode by default.
Otherwise, if customers utilizes a single-ended digital clock source (which works in BYPASS mode) as FXOSC input, they should set XOSC BYPASS MODE 1.
"
Therefore, the value of BOOT_CFG1:15 will depend on how you design is configured. For example using 0 requires an external oscillator as in the RDB3 board:

For the board in which you have not blown the fuses of the S32G3, I would recommend using RCON boot to test the configuration that works for your design, as you can see from the fuse map table, the exact configuration will depend on the kind of QSPI memory and how is the oscillator configured.
Let me know if you need more support.