It appears as though this is not true. I am seeing thousands of MISRA-C 2012 violations in RTD 3.0.0 (build version S32K3_RTD_3_0_0_D2303_ASR_REL_4_7_REV_0000_20230331) and no comments with justifications for the deviations in the source files.
One file for example, is PlatformSDK_S32K3/BaseNXP/include/Compiler.h. This file contains multiple violations of Rule 20.7 (parameter of function-like macro must be enclosed in parentheses), yet there is no comment regarding MISRA-C in the file.
Another example is S32DS_Project/RTD/include/Adc_Sar_Ip_Irq.h. Here, there are numerous violations of Rule 10.4 (Usual arithmetic conversions performed on operands with different essential type categories), and again, there is no comment regarding MISRA-C in the file.
There are many other files with similar problems.