Hi Mario,
yes, you can read out the current state of a pin even if it is configured for FTM function. You can find this note in the reference manual:
"Whenever a pin is configured in any digital pin muxing mode, the input buffer for that
pin is enabled allowing the pin state to be read via the corresponding GPIO Port Data
Input Register (GPIO_PDIR) or allowing a pin interrupt or DMA request to be generated."
Regards,
Lukas