Obviously your project is for other than S12XE derivative or you crafted it to use wrong *unsecure*.cmd file. Here's exceprt form unsecure cmd for S12XE. See different divider settings, no ECLKDIV at all.
Edward
// ver 0.2 (28-Mar-06)
// HCS12XE Core erasing + unsecuring command file:
// These commands mass erase the chip then program the security byte to 0xFE (unsecured state).
DEFINEVALUEDLG "Information required to unsecure the device" "FCLKDIV" 17 "To unsecure the device, the command script needs \nthe correct value for the FCLKDIV onchip register.\n\nDatasheet proposed values:\n\noscillator frequency\tFCLKDIV value (decimal)\n\n 16 \tMHz\t\t17\n 12 \tMHz\t\t13\n 8 \tMHz\t\t9\n 4 \tMHz\t\t5\n"