Please provide additional information:
1) the processor connection schematics as searchable PDF for inspection
2) frequencies of all clocks applied to the processor
3) U-Boot booting log showing RCW (or binary RCW image)
> can T2080's SerDes protocol mode be configured as AA and 2D?
This configuration is not supported - refer to the QorIQ T2080 Reference Manual, 19.1.1.1.1 SerDes Protocols (SerDes 1 and SerDes 2):
"NOTE
The table below lists the SerDes protocol SRDS_PRTCL_S1 and SRDS_PRTCL_S2 combinations supported. When selecting protocols from the table below, there is a restriction to choose the supported protocol combinations by line (SerDes 1 and SerDes 2 together), for example SRDS_PRCTL_S1= A2 can ONLY be combined with SRDS_PRTCL_S2= 16"