Hello Suresh,
the spoofing protection is always active when there is activity on the transmit and receive path, and TJA1153A is supplied via VBAT, VCC and VIO. Could you please check if these three pins are supplied under both conditions?
Is your controller changing anything in the TJA1153A when enabling and disabling the automatic retransmission? Especially the TJA1153A spoofing passlist and blocklist.
With Best Regards,
Jozef