Hello @wdunkley !
The MISO on "A" side is very wavy:
You can try putting Pull-up resistors in the MOSI and MISO signals. You can refer to AN1127.
In the chapter 5 (Applications) of that application note, you can find that the pull up resistor may be needed, depend of the application, in your case, it is a SPI communication, and I believe that the pull up resistors are needed. So, in chapter 5.2 is explained the cases when is necessary to put the pull-up resistors.
Other thing that I could see, the RC circuit between 200K resistor and the 1uF capacitor. The enable time and the disable time are essentially controlled by the RC time constant of the capacitor and the 200k resistor. In the application note is used a 0.1uF capacitor that is so smaller than yours (1uF).
Is it normal for the B side MISO voltage to be so low? The digital Voltage supplied to the A/D is 3.3V and I've changed the Pullup resistors to 700 Ohms.
In this case you can try to increase the resistors, may be to 10K instead of 700 Ohms.
Best regards!