Hi,
As stated on the page originally linked to:
The following projects are Codewarrior Eclipse project and should be imported into Codewarrior 10.6.4.
USBDM_JMxx
This is an entire project including configuration.
The source files in the Sources directory are all required for the project. They implement different features of the software. For example CmdProcessingARM.c contains code related to implementing the features for the ARM targets (Kinetis) while CmdProcessingHCS.c provides code for HCS related devices e.g. HCS08, HCS12 etc. Not all files are used for every BDM interface but the USBDM_SWD_SER_JS16CWJ uses most of them except for Coldfire Vx devices (from memory).
You should not expect a single file. It is usual to divide a project into modules.
bye