Hello @leonggz
You could find the s32k344 model, the updated version of the one presented in the AN you are referring, inside the following path, as illustrated below.
<toolbox_installation_folder>/S32K3_Examples/mc/PMSM

Indeed the models are designed to be deployed on the hardware reference design that we have used for development and testing, but you can modify the model for simulating the algorithm with respect to various scenarios.
For performing such an action, you could isolate the algorithm (hardware independent part) and, instead of feeding it with inputs acquired from the hardware, which is achieved using our MBDT blocks that allow peripherals interaction, you could define your own test inputs and connect them to the algorithm. In a similar manner, the MBDT blocks that are used to output the signals to the hardware could be replaced by scopes or other data visualization generic Simulink blocks. Please feel free to check our webinars on the NXP MBDT Community to find out more about simulation modes, like MIL, SIL and PIL, and how these can be implemented using our toolbox.
Hope this helps,
Irina